STRINGSTRING
Pden_0281 Pden_0281 Pden_0280 Pden_0280 Pden_0283 Pden_0283 Pden_0282 Pden_0282 Pden_0284 Pden_0284 Pden_0287 Pden_0287 Pden_0288 Pden_0288 Pden_0286 Pden_0286 Pden_0279 Pden_0279 Pden_0285 Pden_0285 Pden_0290 Pden_0290
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0281Hydroxyectoine-binding protein / ectoine-binding protein; PFAM: extracellular solute-binding protein, family 3; KEGG: mlo:mlr7133 amino acid ABC transporter protein, solute-binding component. (281 aa)    
Predicted Functional Partners:
Pden_0280
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMb20427 putative amino acid ABC transporter ATP-binding protein.
 
 0.994
Pden_0283
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20430 putative amino acid ABC transporter permease protein.
 
 0.992
Pden_0282
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20429 putative amino acid ABC transporter permease protein.
 
 0.991
Pden_0284
PFAM: Asp/Glu racemase; KEGG: sme:SMb20431 hypothetical arylmalonate decarboxylase protein.
 
     0.819
Pden_0287
PFAM: peptidase M24; KEGG: sme:SMb20434 putative hydrolasepeptidase protein.
 
  
 0.718
Pden_0288
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sme:SMb20435 hypothetical protein.
 
    0.703
Pden_0286
PFAM: ornithine cyclodeaminase/mu-crystallin; Shikimate/quinate 5-dehydrogenase; KEGG: sme:SMb20433 putative cyclodeaminase protein.
 
     0.687
Pden_0279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: ret:RHE_PF00188 putative transcriptional regulator protein, GntR family.
 
   
 0.681
Pden_0285
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ret:RHE_PF00182 probable threonine dehydratase protein.
 
     0.658
Pden_0290
PFAM: aminotransferase class-III; KEGG: sit:TM1040_2691 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.623
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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